PVFS: A Parallel Virtual File System for Linux Clusters

An introduction to the Parallel Virtual File System and a look at how one company installed and tested it.
Coexistence with Other File Systems

As certain types of applications perform better on certain file systems due to their access patterns, it is important to us that PVFS be able to coexist with other file systems. The PVFS system had no problem operating in the same environment with JFS, NFS, SFS and even the MOSIX file system. This neat setup served large I/O requests such as mp3 files on the Web. The MOSIX file system was used by MOSIX to migrate processes on the cluster to the most appropriate CPU at the time.

Typically, PVFS sits on top of the ext2 file system. However, the next generation of Linux file systems will be journaling file systems. This protects against hardware or software failures by producing a log of changes-in-progress that records changes to files and directories in a standard way to a separate location, possibly a separate disk. If the primary file system crashes, the journal can be used to undo any partially completed tasks that would leave the file system in an inconsistent state.

The next step in this perspective is to see how well PVFS performs on top of ext3 and GFS as native file systems. This is left for experimentation on the new cluster (see below).

Scaling up the Installation

Another important factor in choosing a file system such as PVFS is to check how well it can scale up with more client and I/O nodes. Having one nonredundant management node might seem like an inherent bottleneck. However, the manager is not involved in any read or write operations, as these are handled directly between clients and I/O dæmons. It is only when many files are created, removed, opened or closed in rapid succession that the manager is heavily loaded.

We wish to test the scalability of this configuration, however so the upcoming PVFS installation will be on a cluster consisting of 16 PIII 500 MHz CPUs with 512MB RAM each. Eight of the CPUs have 18GB SCSI disks each with a mix of RAID 1 and RAID 5 setup. The projected installation will have one Manager, seven I/O nodes and 14 clients (I/O nodes are also clients). This cluster will allow us to better understand how PVFS will scale for our applications and will additionally allow us to compare PVFS performance with the performance of alternative file systems, such as NFS, for systems of this size. Tests of PVFS on other clusters have shown it to be scalable to systems of more than 64 nodes for other workloads. (See “PVFS: A Parallel File System for Linux Clusters” at PVFS's web site in Resources.)

PVFS Advantages

PVFS is easy to install and configure. It comes with an installation guide that walks administrators through the installation procedure. It provides high performance for I/O intensive parallel or distributed applications. It is also compatible with existing applications so that you don't have to modify them to run with PVFS. PVFS is well supported by the developers through mailing lists.

PVFS Vulnerabilities

PVFS currently contains neither data redundancy nor recovery from node failure. There may also be potential bottlenecks at the manager level as the number of client nodes increases. PVFS endures restrictions introduced by TCP/IP dependence, such as limits on the number of simultaneous open system sockets and network traffic overhead inherent in the TCP/IP protocol. As for security, PVFS provides a rather unsophisticated security model, which is intended for protected cluster networks. Also, for the time being, PVFS is limited to the traditional Linux two gigabyte file size.

Types of applications that benefit the most from PVFS are:

  • Applications requiring large I/O, such as scientific computation or streaming media processing

  • Parallel applications because the bandwidth increases as multiple clients access data simultaneously

Types of applications for which PVFS is poorly suited:

  • Applications requiring many small, low-latency requests, such as static html pages (there is quite a bit of overhead in network traffic for multiple small file requests)

  • Applications requiring long-term storage or failover ability—PVFS does not provide redundancy on its own

Writing PVFS Programs

As noted earlier, existing applications can access PVFS through either the kernel module or the library wrapper interface. This does not require any modification from the user's point of view. However, to obtain the best performance for parallel applications, developers must modify their applications to use a more sophisticated interface. There are two options for this approach as well. The first is to use the native PVFS library calls. This interface allows advanced options, such as specifying file striping and number of I/O nodes. It also lets each process define a “partition” or particular view of the file so that contiguous read operations access only specific offsets within the file (see Figures 2 and 3). Documentation for this is available in the PVFS user's guide.

MPI-IO is the preferred option for writing PVFS programs. It layers additional functionality on top of PVFS, including collective file operations and two phase I/O. This interface is documented as part of the MPI-2 standard.

______________________

Comments

Comment viewing options

Select your preferred way to display the comments and click "Save settings" to activate your changes.

Re: PVFS: A Parallel Virtual File System for Linux Clusters

Anonymous's picture

Hi,

I have the feeling that I already know the answer on my question. However, I'd like to know if it is possible to install PVFS on a Linux cluster as a non-root user?

Greetings,

Jeroen

Webinar
One Click, Universal Protection: Implementing Centralized Security Policies on Linux Systems

As Linux continues to play an ever increasing role in corporate data centers and institutions, ensuring the integrity and protection of these systems must be a priority. With 60% of the world's websites and an increasing share of organization's mission-critical workloads running on Linux, failing to stop malware and other advanced threats on Linux can increasingly impact an organization's reputation and bottom line.

Learn More

Sponsored by Bit9

Webinar
Linux Backup and Recovery Webinar

Most companies incorporate backup procedures for critical data, which can be restored quickly if a loss occurs. However, fewer companies are prepared for catastrophic system failures, in which they lose all data, the entire operating system, applications, settings, patches and more, reducing their system(s) to “bare metal.” After all, before data can be restored to a system, there must be a system to restore it to.

In this one hour webinar, learn how to enhance your existing backup strategies for better disaster recovery preparedness using Storix System Backup Administrator (SBAdmin), a highly flexible bare-metal recovery solution for UNIX and Linux systems.

Learn More

Sponsored by Storix