ROOT: An Object-Oriented Data Analysis Framework
The binaries and sources of ROOT can be downloaded from http://root.cern.ch/root/Version200.html. After downloading, uncompress and unarchive (using tar) the file root_v2.00.Linux.2.0.33.tar.gz in your home directory (or in a system-wide location such as /opt). This procedure will produce the directory /root. This directory contains the following files and subdirectories:
AA_README: read this file before starting
bin: directory containing executables
include: directory containing the ROOT header files
lib: directory containing the ROOT libraries (in shared library format)
macros: directory containing system macros (e.g., GL.C to load OpenGL libs)
icons: directory containing xpm icons
test: some ROOT test programs
tutorials: example macros that can be executed by the bin/root module
Before using the system, you must set the environment variable ROOTSYS to the root directory, e.g., export ROOTSYS=/home/rdm/root, and you must add $ROOTSYS/bin to your path. Once done, you are all set to start rooting.
In this first session, start the ROOT interactive program root. This program gives access via a command-line prompt to all available ROOT classes. By typing C++ statements at the prompt, you can create objects, call functions, execute scripts, etc. Go to the directory $ROOTSYS/tutorials and type:
bash$ root root  1+sqrt(9) (double)4.000000000000e+00 root  for (int i = 0; i < 5; i++)<\n> printf("Hello %d\n", i) Hello 0 Hello 1 Hello 2 Hello 3 Hello 4 root  .q
As you can see, if you know C or C++, you can use ROOT. No new command-line or scripting language to learn. To exit, use .q, which is one of the few “raw” interpreter commands. The dot is the interpreter escape symbol. There are also some dot commands to debug scripts (step, step over, set breakpoint, etc.) or to load and execute scripts.
Let's now try something more interesting. Again, start root:
bash$ root root  TF1 f1("func1", "sin(x)/x", 0, 10) root  f1.Draw() root  f1.Dump() root  f1.Inspect() // Select File/Close Canvas root  .q
Here you create an object of class TF1, a one-dimensional function. In the constructor, you specify a name for the object (which is used if the object is stored in a database), the function and the upper and lower value of x. After having created the function object you can, for example, draw the object by executing the TF1::Draw member function. Figure 1 shows how this function looks. Now, move the mouse over the picture and see how the shape of the cursor changes whenever you cross an object. At any point, you can press the right mouse button to pop-up a context menu showing the available member functions for the current object. For example, move the cursor over the function so that it becomes a pointing finger, and then press the right button. The context menu shows the class and name of the object. Select item SetRange and put -10, 10 in the dialog box fields. (This is equivalent to executing the member function f1.SetRange(-10,10) from the command-line prompt, followed by f1.Draw().) Using the Dump member function (that each ROOT class inherits from the basic ROOT class TObject), you can see the complete state of the current object in memory. The Inspect function shows the same information in a graphics window.
Let's start root again and run the following two macros:
bash$ root root  .x hsimple.C root  .x ntuple1.C // interact with the pictures in the canvas root  .q
Note: if the above doesn't work, make sure you are in the tutorials directory.
Macro hsimple.C (see $ROOTSYS/tutorials/hsimple.C) creates some 1D and 2D histograms and an Ntuple object. (An Ntuple is a collection of tuples; a tuple is a set of numbers.) The histograms and Ntuple are filled with random numbers by executing a loop 25,000 times. During the filling, the 1D histogram is drawn in a canvas and updated each 1,000 fills. At the end of the macro, the histogram and Ntuple objects are stored in a ROOT database.
The ntuple1.C macro uses the database created in the previous macro. It creates a canvas object and four graphics pads. In each of the four pads, a distribution of different Ntuple quantities is drawn. Typically, data analysis is done by drawing in a histogram with one of the tuple quantities when some of the other quantities pass a certain condition. For example, our Ntuple contains the quantities px, py, pz, random and i. The command:
ntuple->Draw("px", "pz < 1")
will fill a histogram containing the distribution of the px values for all tuples for which pz < 1. Substitute for the abstract quantities used in this example quantities such as name, sex, age, length, etc., and you can easily understand that Ntuples can be used in many different ways. An Ntuple of 25,000 tuples is quite small. In typical physics analysis situations, Ntuples can contain many millions of tuples. Besides the simple Ntuple, the ROOT system also provides a Tree. A Tree is an Ntuple generalized to complete objects. That is, instead of sets of tuples, a Tree can store sets of objects. The object attributes can be analyzed in the same way as the tuple quantities. For more information on Trees, see the ROOT HOWTOs at http://root.cern.ch/root/Howto.html.
During data analysis, you often need to test the data with a hypothesis. A hypothesis is a theoretical/empirical function that describes a model. To see if the data matches the model, you use minimization techniques to tune the model parameters so that the function best matches the data; this is called fitting. ROOT allows you to fit standard functions like polynomials, Gaussian exponentials or custom defined functions to your data. In the top right pad in Figure 2, the data has been fit with a polynomial of degree two (red curve). This was done by calling the Fit member function of the histogram object:
Moving the cursor over the canvas allows you to interact with the different objects. For example, the 3D plot in the lower-right corner can be rotated by clicking the left mouse button and moving the cursor.
Fast/Flexible Linux OS Recovery
On Demand Now
In this live one-hour webinar, learn how to enhance your existing backup strategies for complete disaster recovery preparedness using Storix System Backup Administrator (SBAdmin), a highly flexible full-system recovery solution for UNIX and Linux systems.
Join Linux Journal's Shawn Powers and David Huffman, President/CEO, Storix, Inc.
Free to Linux Journal readers.Register Now!
- The Italian Army Switches to LibreOffice
- Download "Linux Management with Red Hat Satellite: Measuring Business Impact and ROI"
- Linux Mint 18
- Oracle vs. Google: Round 2
- The FBI and the Mozilla Foundation Lock Horns over Known Security Hole
- Varnish Software's Varnish Massive Storage Engine
- Devuan Beta Release
- Privacy and the New Math
- Ben Rady's Serverless Single Page Apps (The Pragmatic Programmers)
Until recently, IBM’s Power Platform was looked upon as being the system that hosted IBM’s flavor of UNIX and proprietary operating system called IBM i. These servers often are found in medium-size businesses running ERP, CRM and financials for on-premise customers. By enabling the Power platform to run the Linux OS, IBM now has positioned Power to be the platform of choice for those already running Linux that are facing scalability issues, especially customers looking at analytics, big data or cloud computing.
￼Running Linux on IBM’s Power hardware offers some obvious benefits, including improved processing speed and memory bandwidth, inherent security, and simpler deployment and management. But if you look beyond the impressive architecture, you’ll also find an open ecosystem that has given rise to a strong, innovative community, as well as an inventory of system and network management applications that really help leverage the benefits offered by running Linux on Power.Get the Guide